Classroom demonstration programs
Spring (harmonic oscillator)
Ising/Potts models
2D Lennard Jones molecular dynamics simulations
3D Lennard Jones molecular dynamics simulations
3D Lennard Jones Monte Carlo simulations
3D Lennard Jones Gibbs-ensemble simulations
C
α
normal mode
C
α
Go model
Dynamic programming: aligning two strings
Dynamic programming: aligning two amino acid sequences
Dynamic programming: RNA secondary structures
Markov-chain random text generator
Games and fun stuff
Spherical harmonics screen-saver
Minesweep
Lightsout
Tiny windows programs
Etc.
A Python automatic code generator for C code
A protein databank (PDB) searching script