Classroom demonstration programs

• Spring (harmonic oscillator)
• Ising/Potts models
• 2D Lennard Jones molecular dynamics simulations
• 3D Lennard Jones molecular dynamics simulations
• 3D Lennard Jones Monte Carlo simulations
• 3D Lennard Jones Gibbs-ensemble simulations
• C_α normal mode
• C_α Go model
• Dynamic programming: aligning two strings
• Dynamic programming: aligning two amino acid sequences
• Dynamic programming: RNA secondary structures
• Markov-chain random text generator

Games and fun stuff

• Spherical harmonics screen-saver
• Minesweep
• Lightsout
• Tiny windows programs

Etc.

• A Python automatic code generator for C code
• A protein databank (PDB) searching script