Dynamic programming: alignment of two protein (amino acid) sequences
The aim is to find the best alignment of two protein (amino acid) sequences.
Javascript demonstration of aligning two amino-acid sequences
Protein 1:
Protein 2:
Scoring matrix
Gap scores:
Best score: ?.
Best alignment:
Score table (truncated at the first 20 amino acid residues):
The score at the bottom-right corner of the table gives
the best alignment score of the two sequences.